IB Biology HL Cell Structure & Microscopy Paper 1 & 2 ~13 min read

Eukaryotic Cell Structure

A eukaryotic cell is not just a bigger bacterium. It is divided into rooms, and each room does a different job under its own conditions. Learn the organelles as a team rather than a list, and the whole topic gets easier — because exam questions almost always ask how two of them work together.

📚 What you need to know

The cell as a set of rooms

Picture a factory. There is an office with the plans in it, a production floor, a packing department, a power station and a bin store. Nobody would run all of those in one open room. A eukaryotic cell has the same idea: keep jobs apart, and each job runs better.

A eukaryotic cell and its organelles Each membrane inside the cell creates a separate space with its own conditions. nucleus — holds the DNA rough ER — makes proteins smooth ER — makes lipids Golgi — packs and labels them mitochondrion — releases energy 80S ribosomes — build proteins lysosome — digests waste vesicle — carries cargo aboutThe small brown dots are ribosomes. Some are stuck on the rough ER, some float free.
This is an animal cell. A plant cell would keep everything here and add a cellulose wall, chloroplasts and one huge central vacuole.

What each organelle does

OrganelleWhat it looks likeWhat it does
NucleusLarge, round, wrapped in a double membrane with poresStores the DNA and controls the cell by deciding which genes are used
NucleolusA dark patch inside the nucleusMakes the parts that ribosomes are built from
Rough ERFlattened sacs covered in ribosomesMakes proteins and moves them through the cell
Smooth ERTubes with no ribosomes on themMakes lipids and steroids, and stores calcium
Golgi apparatusA stack of curved flattened sacsModifies proteins, then sorts and packages them into vesicles
VesiclesSmall membrane bubblesCarry substances between organelles and to the plasma membrane
MitochondrionOval, with a folded inner membraneCarries out aerobic respiration to release energy as ATP
Ribosomes (80S)Tiny dots, free or attached to the rough ERJoin amino acids to build proteins
LysosomeA small sac of digestive enzymesBreaks down worn-out organelles, waste and material taken into the cell
ChloroplastGreen, with stacked internal membranes; plants onlyCarries out photosynthesis
VacuoleLarge and permanent in plants, small in animalsStores water and solutes, and keeps a plant cell firm
Cell wallRigid cellulose layer outside the membrane; plants onlySupports the cell and stops it bursting
The folds inside a mitochondrion are called cristae, and they exist for one reason: surface area. More folded membrane means more room for the proteins that make ATP. If a question gives you a cell with unusually many mitochondria, it wants you to say that cell needs a lot of energy — muscle, sperm, or something doing active transport.

The protein export line

This sequence appears in exams constantly, and it is much easier to remember as a journey than as separate facts.

How a protein gets out of the cell One route, five stops. Learn the order and most protein questions answer themselves. nucleus rough ER vesicle Golgi membranemRNA made protein built carried across modified, packed released outsideNucleus, rough ER, vesicle, Golgi, vesicle, out The last step, where the vesicle fuses with the membrane, is exocytosis.
Vesicles appear twice in this route, which is why “vesicle” on its own is rarely enough in an answer — say which two organelles it is travelling between.
  1. A gene in the nucleus is copied into mRNA, which leaves through a nuclear pore.
  2. Ribosomes on the rough ER read the mRNA and build the protein, which ends up inside the ER sacs.
  3. A vesicle buds off the ER carrying the protein.
  4. The vesicle fuses with the Golgi apparatus, where the protein is modified — sugars added, chains trimmed — then packaged.
  5. Another vesicle carries it to the plasma membrane, fuses with it, and the protein is released outside. That release is exocytosis.

Animal cells and plant cells

Both are eukaryotic, so they share nearly everything. Three additions and one removal cover the difference.

FeatureAnimal cellPlant cell
Cell wallAbsentPresent, made of cellulose
ChloroplastsAbsentPresent in cells exposed to light
VacuoleSmall and temporary, if presentOne large permanent central vacuole
CentriolesPresentAbsent from flowering plants
ShapeRounded and flexibleFixed and often box-like, held by the wall
Storage carbohydrateGlycogenStarch
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Plants get three extras

Wall, Chloroplast, Vacuole. Everything else on a plant cell is also on an animal cell, so you only have to remember what gets added.

The reason for the nuclear membrane. Putting DNA in its own compartment means transcription and translation happen in different places. mRNA can be checked and edited on the way out before any protein is made from it. A prokaryote cannot do this — translation starts while the mRNA is still being copied.

Worked examples

WE 1

Trace a protein out of the cell

Outline the path taken by a protein that is made in a cell and then secreted from it. (4 marks)

Step 1: the instructions mRNA is transcribed in the nucleus and leaves through a nuclear pore. Step 2: building it Ribosomes on the rough ER use the mRNA to build the protein. Step 3: modifying it A vesicle carries the protein to the Golgi apparatus, where it is modified and packaged. Step 4: getting it out A second vesicle carries it to the plasma membrane and fuses with it, releasing the protein by exocytosis. Nucleus → rough ER → vesicle → Golgi → vesicle → out the word “exocytosis” is nearly always worth a mark on its own
WE 2

Deduce a cell’s job from its organelles

A cell contains a great deal of rough ER, many Golgi bodies and unusually many mitochondria. Suggest the function of this cell. (3 marks)

Clue 1: lots of rough ER Rough ER makes proteins, so this cell must be producing them in large amounts. Clue 2: many Golgi bodies The Golgi packages proteins for export, so the proteins are being secreted rather than kept. Clue 3: many mitochondria Making and exporting proteins needs a lot of ATP, which the mitochondria supply. A secretory cell, such as one producing enzymes or hormones link each organelle to a job, then combine them — do not guess from one clue
WE 3

Compare a plant and an animal cell

State three structures found in a plant cell but not in an animal cell, and give a function for each. (3 marks)

Structure 1 Cellulose cell wall — supports the cell and stops it bursting when water enters. Structure 2 Chloroplast — carries out photosynthesis to make glucose. Structure 3 Large permanent vacuole — stores water and solutes and keeps the cell firm. Wall, chloroplast, vacuole a wall alone is not enough — say cellulose, since bacteria and fungi have walls too

💡 Exam tips

⚠ Common mistakes

Up next: Functions of Life — the jobs every living cell has to carry out, and how a single-celled organism manages all of them at once.

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