IB Biology HL Cell Structure & Microscopy Paper 1 & 2 ~10 min read

General Cell Structure

A bacterium and a liver cell look nothing alike, and one is about fifty times wider than the other. But strip both back to essentials and you find the same four things every time. Those four are worth learning first, because everything else in this topic is a variation on them.

📚 What you need to know

The four things every cell has

Whatever the organism, whatever the job, no cell manages without these.

In every single cell plasma membrane • cytoplasm • DNA • ribosomes
The four parts shared by every cell Learn these first. Every other structure you meet is an extra on top of them. plasma membrane the boundary that controls entry cytoplasm watery jelly where reactions happenribosomes where proteins are made DNA the instructions for the cellBoundary, workspace, instructions, factory A cell needs all four to work, which is why none of them counts as alive on its own.
The oval here is deliberately generic. It could be a bacterium or a cheek cell — at this level of detail you cannot tell them apart, and that is the point.

Plasma membrane

Every cell is wrapped in a thin membrane made mainly of phospholipids. It does two jobs at once. It holds the contents in, keeping the inside separate from the outside. And it decides what crosses, letting some substances through while blocking others. That second job is called being partially permeable.

Without a boundary, the chemicals a cell needs would simply drift away. This is why the membrane is the one structure you can never leave out of a definition of a cell.

Cytoplasm

The cytoplasm is the watery substance filling the cell. It is not just water — it is packed with dissolved enzymes, ions and small molecules, and it is where most of the cell’s chemical reactions take place. Respiration in a prokaryote starts here. So does protein synthesis, since ribosomes sit in it.

DNA

DNA holds the coded instructions for building proteins, and proteins do almost everything in a cell. Where the DNA sits is the single biggest difference between the two cell types:

Ribosomes

Ribosomes are tiny structures that read the instructions from DNA and join amino acids together into proteins. They are not surrounded by a membrane, which is why even the simplest cells have them.

Two sizes, and the numbers matter. Prokaryotic ribosomes are 70S and eukaryotic ones are 80S. The S is a measure of how fast they settle when spun in a centrifuge, so it is a size measurement rather than a mass. Examiners like this detail because it is a quick way to tell the two cell types apart from a description.

The two types of cell

Every cell on Earth falls into one of two groups. The names tell you the difference: karyon is Greek for kernel or nut, and it means the nucleus here. Prokaryotic means “before a nucleus”. Eukaryotic means “true nucleus”.

Two types of cell, drawn roughly to scale The difference is not just size. It is whether the inside is divided into compartments. Prokaryotic cell no nucleus, DNA loose in cytoplasm Eukaryotic cell DNA sealed inside a nucleus usually 1 to 5 µm across usually 10 to 100 µm acrossA eukaryotic cell has rooms; a prokaryotic cell is one open space Compartments let a eukaryotic cell run reactions that would otherwise interfere.
Both cells contain the same four essentials. The eukaryotic one just adds walls inside itself so different jobs can happen in different places at once.
FeatureProkaryotic cellEukaryotic cell
NucleusAbsent — DNA sits in the nucleoidPresent, with a double membrane
DNA shapeCircular, and not wrapped around proteinsLinear, wound around histone proteins
Membrane-bound organellesNoneMany, such as mitochondria and Golgi
Ribosomes70S, smaller80S, larger
Typical size1 to 5 µm10 to 100 µm
Cell wallUsually present, made of peptidoglycanPresent in plants and fungi only, and made of different material
ExamplesBacteria and archaeaAnimals, plants, fungi and protists
🧠

Pro means before

Prokaryote came before the nucleus existed. Eukaryote has a proper (eu = true) nucleus. If you can remember which prefix means what, you never mix the two up.

Why compartments are worth having

This is the part that is usually skipped, and it explains the whole of the next few pages.

In a prokaryotic cell everything happens in the same open space. That works, but it limits you. Two reactions that need different conditions cannot both run well at once, and an enzyme that digests things cannot be let loose or it damages the cell itself.

A eukaryotic cell solves this by building membranes inside itself. Digestive enzymes get sealed in a lysosome. Respiration gets its own compartment in a mitochondrion. The DNA gets protected inside a nucleus. Each compartment can hold the exact conditions its reactions need, and dangerous chemicals stay where they are meant to be.

If a question asks for an advantage of compartmentalisation, give a concrete reason rather than saying “it is more efficient”. Say that reactions can be kept separate, that each compartment can keep its own pH and enzymes, and that harmful enzymes are isolated from the rest of the cell.

Worked examples

WE 1

State the features common to all cells

State four structures found in all living cells and give the function of each. (4 marks)

Structure 1 Plasma membrane — forms the boundary and controls what enters and leaves. Structure 2 Cytoplasm — the site of most chemical reactions in the cell. Structure 3 DNA — carries the coded instructions for making proteins. Structure 4 Ribosomes — where amino acids are joined together to make proteins. Membrane, cytoplasm, DNA, ribosomes the question says “and give the function”, so a bare list of names scores half
WE 2

Identify a cell type from a description

An electron micrograph shows a cell 2 µm long, with no internal membranes and DNA lying free in the cytoplasm. Deduce the type of cell and justify your answer. (3 marks)

Step 1: the deduction It is a prokaryotic cell. Step 2: first reason The DNA is not enclosed, so there is no nucleus, which rules out a eukaryotic cell. Step 3: second reason There are no membrane-bound organelles, and 2 µm fits the usual prokaryotic range of 1 to 5 µm. Prokaryotic — no nucleus, no organelles, and the right size “justify” means give evidence from the stem, not general knowledge
WE 3

Explain the value of compartments

Explain one advantage to a eukaryotic cell of having membrane-bound organelles. (3 marks)

Point 1: what a membrane does A membrane separates the inside of the organelle from the rest of the cytoplasm. Point 2: what that allows Each compartment can hold its own enzymes, pH and concentrations, so reactions run at their best rate. Point 3: a concrete case Digestive enzymes stay sealed inside lysosomes, so they break down waste without damaging the cell itself. Separate conditions for separate reactions, and harmful enzymes kept apart one clear example is worth more than three vague statements

💡 Exam tips

⚠ Common mistakes

Up next: Prokaryotic Cell Structure — a proper look inside a bacterium, including the parts that only prokaryotes have.

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