IB Biology SL Topic 3 — Enzymes & Metabolism Paper 1 & 2 Practical skill ~12 min read

Enzyme Activity (Skills)

Three factors change how fast an enzyme works: temperature, pH and substrate concentration. You need to be able to sketch all three graphs from memory and explain every part of the shape — not just the peak.

📚 What you need to know

Temperature

This is the graph students draw quickly and explain badly. It has two halves, and they need completely different answers.

Rate against temperature gentle rise, sharp fall: the two sides have different causes optimum, near 35°Crising side: more kinetic energy, so more successful collisions falling side: bonds break, enzyme is denatured0 10 20 30 40 50 60 temperature / °C rate of reactionThe fall is steeper than the rise, and that asymmetry is deliberate. Collisions build up gradually. Denaturation, once it starts, happens fast.
Draw the peak slightly left of centre and let the right-hand side drop almost vertically — a symmetrical hill is a common way to lose the shape mark.

Explaining the rising side

Explaining the falling side

If a question says “explain the shape of the graph”, it almost always wants both halves. Write about collisions for the rise and denaturation for the fall — and never mix the two round.

pH

pH measures the concentration of hydrogen ions. It runs on a logarithmic scale, so each step of one pH unit is a tenfold change in hydrogen ion concentration — pH 4 is ten times more acidic than pH 5, not slightly more.

Those hydrogen ions interfere with the charges on the R-groups that hold the enzyme’s shape together. A little way from the optimum and the shape is distorted; further away and the enzyme is denatured for good.

Rate against pH for three enzymes each enzyme has its own optimum, and it is not always neutral pepsin urease trypsin0 2 4 6 8 10 12 14 pH rate of reactionPepsin works in the stomach, so its optimum is strongly acidic. An enzyme’s optimum matches the place in the body where it works.
The curves are narrow on purpose. Move one or two pH units away from the optimum and most of the activity has already gone.
Do not assume pH 7. Pepsin works best around pH 2 because the stomach is acidic, and some bacterial enzymes work best at pH 9–10. The optimum always matches the enzyme’s normal surroundings.

Substrate concentration

Add more substrate and at first the rate climbs steeply — there are plenty of empty active sites, so extra substrate molecules find one quickly. But active sites are occupied while a reaction is happening, and there is a fixed number of them.

Eventually every active site is busy the whole time. The enzymes are working flat out and the rate cannot rise any further. That point is called saturation.

Rate against substrate concentration drawn with the amount of enzyme kept constant maximum rate once every active site is busy, extra substrate cannot speed it up steep at first: many active sites are still freesubstrate concentration rate of reactionTo raise the plateau you must add more enzyme, not more substrate. More enzyme means more active sites, so a higher maximum rate.
The curve flattens but never turns downwards. Extra substrate does no harm — it simply queues.
A favourite follow-up question: “how could you increase the rate once the plateau is reached?” The answer is more enzyme, because that adds more active sites. More substrate does nothing at all.

Designing the experiment

Whichever factor you are testing, the plan has the same skeleton.

Part of the planWhat to write
Independent variableTemperature, pH or substrate concentration — one only, with at least five values across a sensible range
Dependent variableRate, measured as product formed or substrate lost, with units stated
Control variablesThe other two factors, plus enzyme concentration, volume and total time
Apparatus choiceFollows from the dependent variable: gas syringe or measuring cylinder for oxygen, colorimeter for a colour change
RepeatsAt least three at each value, then take a mean and ignore obvious anomalies

Method 1: catalase and hydrogen peroxide (product appearing)

Hydrogen peroxide is a toxic by-product of metabolism, so cells must break it down quickly. Catalase does it, splitting hydrogen peroxide into water and oxygen. The oxygen is a gas, which makes it easy to collect and measure.

The reaction hydrogen peroxide → water + oxygen   (catalysed by catalase)
Collecting the oxygen made by catalase measuring the product as it appears delivery tube bungoxygen collects here water potato cubes in hydrogen peroxide upturned measuring cylinderThe water stops air getting in, so all the gas collected is your oxygen. Potato is used simply because its cells are rich in catalase.
To test temperature, stand the flask in a water bath and let it reach that temperature before adding the hydrogen peroxide.

🧩 Running it properly

  1. Prepare identical potato pieces. Same number, same size, same mass every time — this keeps enzyme amount constant.
  2. Set the temperature. Stand the flask in a water bath, with the water level above the level of liquid inside the flask so heating is even.
  3. Let it equilibrate. Give the contents a few minutes to reach the bath temperature before you start.
  4. Add the hydrogen peroxide, bung it, start the clock in that order. Gas escaping before the bung is in is a common source of error.
  5. Swirl gently to keep the mixture evenly mixed and evenly heated.
  6. Record the volume of oxygen at fixed time intervals, then repeat the whole thing at each temperature.

Method 2: amylase and starch (substrate disappearing)

Sometimes there is no gas to collect, so you follow the substrate instead. Amylase hydrolyses starch into maltose and glucose, and starch is easy to test for: a drop of iodine solution turns blue-black if starch is present, and stays yellow-brown if it is not.

Making the concentrations: a serial dilution is the neat way to do it. Take 1 cm3 of your stock solution, add 9 cm3 of water, mix, then take 1 cm3 of that and repeat. Each step is ten times weaker than the one before.

Method 3: using a colorimeter

A colorimeter measures how much light a solution absorbs or transmits, so it can follow any enzyme reaction involving a colour change. As the starch–iodine colour fades, absorbance falls and transmission rises.

Worked examples

WORKED EXAMPLE

Explain the shape of the graph of rate against temperature between 5°C and 55°C. [4]

Step 1: split the graph in two Rise up to the optimum, then a sharp fall after it. Step 2: explain the rise More kinetic energy → faster movement → more successful collisions → more complexes Step 3: explain the fall Weak bonds break, the active site changes shape, substrate no longer complementary. Rate rises to the optimum because of collisions, then falls because the enzyme denatures four marks usually means two ideas each side — do not spend them all on the rise
WORKED EXAMPLE

A student investigates pH using catalase. Give the independent variable, the dependent variable and two control variables. [4]

Step 1: what is being changed IV = pH of the buffer solution Step 2: what is being measured DV = volume of oxygen collected in cm3 in a fixed time Step 3: what must stay the same Temperature, and the mass or surface area of potato used. IV pH, DV volume of oxygen per unit time, controls temperature and enzyme amount substrate concentration and total volume are also good control answers
WORKED EXAMPLE

A reaction has reached its plateau on a graph of rate against substrate concentration. Suggest how to increase the rate further, and explain why. [2]

Step 1: name what is limiting the rate All active sites are occupied, so the enzyme is the limit — not the substrate. Step 2: fix that limit more enzyme = more active sites available Increase the enzyme concentration “add more substrate” scores nothing here — that is exactly what has stopped working

💡 Exam tip

⚠ Common mix-up

Up next: Enzyme Reaction Rates (Skills) — turning your raw readings into an actual number, drawing tangents and calculating the initial rate.

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