IB Biology HL Cell Membranes & Transport Paper 1 & 2 ~11 min read

Membrane Proteins

The phospholipid bilayer is an excellent wall, and a wall on its own is useless. Everything a membrane actually does — letting glucose in, pumping sodium out, hearing a hormone, sticking to the cell next door — is done by a protein sitting in it.

📚 What you need to know

Integral or peripheral?

The difference comes straight from the last page. The middle of the bilayer is hydrophobic, so any protein that sits inside it must have hydrophobic regions of its own — hydrophobic R groups on the outside of that part of the protein, facing the tails.

Proteins that have those hydrophobic regions can embed themselves in the membrane: these are integral proteins. Proteins that are hydrophilic all over cannot, so they stay on the surface: these are peripheral proteins.

Two ways a protein can sit in a membrane It depends entirely on whether the protein has hydrophobic regions.INTEGRAL embedded in the bilayer PERIPHERAL attached to the surface • partly hydrophobic, so amphipathic • crosses both layers, or just one • channels, carriers, pumps, enzymes• hydrophilic all over • held on by integral proteins or heads • can be on the inside or the outsideWhere a protein sits is decided by its own R groups.
The channel on the left is transmembrane; the block beside it is integral but only reaches into one layer. Both are integral.
This is your protein structure knowledge paying off. A transmembrane protein has a band of hydrophobic R groups around its middle, so it is stable sitting in the tails, and hydrophilic R groups at both ends, so it is stable sticking out into the water. The membrane does not choose where proteins go — the amino acid sequence does.

What membrane proteins do

Six jobs come up again and again. You are not expected to memorise a list of protein names, but you should be able to name a job and give an example.

Six jobs done by membrane proteins Same bilayer, completely different proteins sitting in it. Transport channels and carriers move ions and polar molecules e.g. sodium channel Receptors bind hormones and neurotransmitters e.g. insulin receptor Immobilised enzymes active site exposed on the membrane surface e.g. maltase Cell adhesion hold neighbouring cells together in a tissue e.g. junction proteins Cell recognition glycoproteins act as markers, or antigens e.g. ABO antigens Electron carriers pass electrons along in respiration and photosynthesis e.g. cytochromeLearn one example per job and you can answer any version of this question.
Notice how many of these you have met before. Membrane proteins are where several topics meet.

Channels and carriers

Transport is the job you will be asked about most, so it is worth separating the two protein types properly. Both are integral, both are specific, and they work in completely different ways.

FeatureChannel proteinCarrier protein
ShapeFixed — a permanent pore through the proteinSwitches between two shapes
How it worksThe substance passes through the holeThe substance binds, the protein changes shape, the substance is released on the other side
Typical cargoIons and waterLarger polar molecules such as glucose and amino acids
Can it be gated?Yes — part of the protein can swing across to close the poreNot gated, but only works when the correct substance binds
Used inFacilitated diffusion onlyFacilitated diffusion and active transport

Gated channels are worth a second look. Part of the protein on the inner surface of the membrane can move to open or close the pore, so the cell is not stuck with a permanent hole. This is how nerve cells control exactly when sodium ions are allowed to rush in, which is what makes a nerve impulse possible.

Specificity, again. A transport protein binds its substance the same way an enzyme binds its substrate: the binding site has a shape and a set of R groups that only fit one thing. Same principle, different job.

Not every membrane has the same proteins

The protein content of a membrane matches what that membrane is for. A membrane that only needs to be a barrier has few proteins; a membrane that has to do chemistry is packed with them.

If you are ever asked to compare two membranes, do not just say “one has more protein”. Say why: the inner mitochondrial membrane carries out oxidative phosphorylation, which needs electron carriers and ATP synthase, and all of those are proteins.

Worked examples

WE 1

Distinguishing the two types

Distinguish between integral and peripheral membrane proteins. (3 marks)

Point 1: position Integral proteins are embedded in the phospholipid bilayer, whereas peripheral proteins sit on its surface. Point 2: chemistry Integral proteins are amphipathic, with hydrophobic regions that hold them in the core; peripheral proteins are hydrophilic. Point 3: attachment Peripheral proteins are attached to integral proteins or to the phosphate heads, rather than to the tails. integral = inside the bilayer; peripheral = on the surface “distinguish” needs both sides of each point — use “whereas” to force yourself to do it
WE 2

Explaining a position in the membrane

Explain why a transmembrane protein has hydrophobic amino acids in the middle of its chain but hydrophilic ones at each end. (3 marks)

Point 1: the middle The middle of the protein sits in the hydrophobic core of the bilayer, among the fatty acid tails. Point 2: why that matters Hydrophobic R groups there are stable next to the non-polar tails, which anchors the protein in place. Point 3: the ends Both ends stick out into watery surroundings — the cytoplasm and the extracellular fluid — so hydrophilic R groups are stable there. the R groups match whatever surrounds each part of the protein this question is really testing tertiary structure; say “R groups” and you are on the right track
WE 3

Interpreting a difference between membranes

A student finds that the inner membrane of a mitochondrion contains about 75% protein by mass, whereas the myelin sheath around an axon contains about 20%. Suggest a reason for this difference. (2 marks)

Step 1: what the mitochondrion does The inner membrane carries out the electron transport chain, which needs many electron carrier proteins and ATP synthase. Step 2: what myelin does Myelin is an insulator. Its job is to be a barrier, and a barrier is made of lipid, not protein. protein content matches the function of the membrane whenever you see a percentage comparison, answer in terms of function, not just numbers

💡 Exam tips

⚠ Common mistakes

Up next: Membrane Transport — we have the wall and we have the doors. Now let us watch things actually go through.

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