IB Biology SL Topic 2 — Cell Structure Paper 1 & 2 Practical skill ~13 min read

Cell Theory: Skills in Microscopy

This is the page where marks are won and lost on units, not on biology. Get comfortable moving between millimetres, micrometres and nanometres and the magnification questions become some of the easiest in the paper.

📚 What you need to know

The parts of a light microscope

The optical (light) microscope Light travels up from the bottom, through the specimen, to your eye eyepiece lens objective lenses slide stage light source turret – rotates the lenses coarse focus (big knob) fine focus (small knob) Always start on the lowest power objective, then work up. Focus with the coarse knob on low power; use only the fine knob on high power.
Starting on low power does two jobs: it is far easier to find your specimen in a wide field of view, and it stops the lens crashing into the slide.

Preparing a slide

🧩 Making a temporary mount

  1. Get a thin sample. Liquid: a few drops with a pipette. Solid: peel or cut a very thin layer with a scalpel or forceps, using scissors to trim first.
  2. Add a stain if needed. Many structures are colourless, so a stain makes them visible.
  3. Lower a coverslip gently and press down to squeeze out air bubbles — bubbles look like dark-edged circles and get mistaken for cells.
  4. Clip the slide onto the stage and switch the light on.
  5. Focus on low power first, then rotate to a higher objective and sharpen with the fine focus only.
  6. Wear gloves to avoid staining your skin and to stop your own cells contaminating the sample.
Blurry image? Work through this. Drop back to a lower power and re-focus with the coarse knob. Check the sample is thin enough for light to pass through. And check you are not looking at contamination — a stray fibre or your own skin cell — rather than your specimen.

Measuring with a graticule

An eyepiece graticule is a small glass disc with a scale engraved on it, sitting inside the eyepiece. You see the scale laid over whatever you are looking at.

The catch is that its divisions have no fixed size. Change the objective lens and the specimen changes size while the graticule stays the same, so the scale means something different. That is why you must calibrate it against a stage micrometer — a slide with a scale of known real length engraved on it.

Calibrating the eyepiece graticule Line the two scales up and read off how much one division is worth 0 2 4 6 8 10 0 0.1 0.2 0.3 0.4 mm eyepiece graticule stage micrometer 10 graticule divisions line up with 0.4 mm, so 1 division = 40 micrometres. Once calibrated, the graticule works as a ruler inside the field of view.
Recalibrate every time you change objective lens. The graticule divisions never change size, but what they are worth does.

Magnification calculations

Magnification tells you how many times bigger the image is than the real thing. It is a ratio of two lengths, so it has no units — just a number, usually written with a multiplication sign.

Learn this triangle magnification = image size ÷ actual size
actual size = image size ÷ magnification

Getting the units right

Going down a sizeDo thisExample
m to mm× 10000.5 m = 500 mm
mm to µm× 10000.005 mm = 5 µm
µm to nm× 10005 µm = 5000 nm
Going back up÷ 1000 each time20 000 nm = 20 µm = 0.02 mm
Do the unit conversion before you touch the calculator, and pick the smaller of the two units to convert into. Most lost marks here are not biology mistakes at all — they are a factor of a thousand in the wrong direction.

Using a scale bar

A scale bar is a line drawn on a micrograph with a real length written beside it. Measure the printed line with a ruler and you have the image size; the label is the actual size. Then it is just the same formula.

Worked examples

WORKED EXAMPLE

An image of a cell measures 45 mm across. The cell is really 15 µm across. Calculate the magnification.

Step 1: convert to the same unit the smaller unit here is micrometres, so convert the image size 45 mm × 1000 = 45 000 µm Step 2: apply the formula magnification = 45 000 ÷ 15 × 3000 no units on the answer – it is a ratio
WORKED EXAMPLE

A drawing of an organelle is 60 mm long and was made at a magnification of ×1500. Calculate its actual length in µm.

Step 1: rearrange the formula actual size = image size ÷ magnification Step 2: substitute 60 ÷ 1500 = 0.04 mm Step 3: convert to micrometres 0.04 mm × 1000 = 40 µm 40 µm check the unit the question asks for – it is rarely the one you end up with
WORKED EXAMPLE

10 eyepiece graticule divisions line up with 0.4 mm on a stage micrometer. A cell spans 6 graticule divisions. Calculate its length in µm.

Step 1: calibrate one division 0.4 mm ÷ 10 = 0.04 mm per division 0.04 mm × 1000 = 40 µm per division Step 2: multiply by the number of divisions 6 × 40 = 240 240 µm calibrate first, measure second – always in that order
WORKED EXAMPLE

A micrograph has a scale bar labelled 10 µm. Measured with a ruler, the bar is 30 mm long. Calculate the magnification of the micrograph.

Step 1: identify which is which the measured bar is the image size; the label is the actual size Step 2: convert to the same unit 30 mm × 1000 = 30 000 µm Step 3: divide 30 000 ÷ 10 = 3000 × 3000

💡 Exam tip

⚠ Common mix-up

Up next: Microscopes — why a light microscope hits a wall at about 200 nm, and what electron microscopes can do about it.

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