IB Biology SL Topic 3 — Enzymes & Metabolism Paper 1 & 2 Core idea ~9 min read

Metabolism: Enzymes & Reactions

Right now, inside every one of your cells, thousands of chemical reactions are running at once — and almost none of them would happen fast enough on their own. Metabolism is the whole set of those reactions, and enzymes are what make them possible at body temperature.

📚 What you need to know

What metabolism actually means

The word sounds grand, but the idea is simple. Metabolism is just a name for everything chemical that a living thing does. Digesting a sandwich is metabolism. Building muscle protein is metabolism. So is respiring glucose, making urea and joining glucose molecules into glycogen.

Because that is a huge list, biologists sort it in two ways: by direction (building up or breaking down) and by pathway (which chain of steps a molecule travels along). Get those two ideas straight and the rest of this topic sits on top of them neatly.

Definition metabolism = all the chemical reactions taking place inside cells and organisms

Why cells cannot manage without enzymes

In a school lab, if a reaction is too slow you have three obvious options: heat it, squeeze it under pressure, or push the pH to an extreme. A cell can use none of these. Heat above about 40°C wrecks its proteins, it cannot generate high pressure, and extreme pH would destroy the very molecules it is trying to protect.

There is a second problem. For two molecules to react they must bump into each other at the right speed and, just as importantly, at the right angle. Left to chance, the odds of that happening are tiny — so tiny that the reaction would be nowhere near fast enough to keep a cell alive.

Enzymes solve both problems at once. They grab hold of the reacting molecules, hold them in exactly the right position, and hold them close together. What was a lucky accident becomes a near certainty.

Think of an enzyme as a workbench with a clamp. The parts were always able to fit together — the clamp just stops them wobbling and lines them up so the join happens first time, every time.
Two words examiners like to see: enzymes are reusable and remain unchanged by the reaction they catalyse. That is the whole reason a cell can get away with making only small amounts of each one.

Anabolic and catabolic reactions

Every metabolic reaction is going in one of two directions. Either small things are being joined into something bigger, or something big is being taken apart.

The two directions of metabolism every metabolic reaction is either building up or breaking down ANABOLIC: BUILDING UP CATABOLIC: BREAKING DOWN small molecules one large molecule energy taken in (endergonic) usually a condensation reaction one large molecule smaller molecules energy given out (exergonic) usually a hydrolysis reactionBoth directions are run by enzymes, and both are linked to ATP. Anabolism spends the energy that catabolism releases.
Notice the small blue units are the same on both sides — the only thing that changes is whether they are being joined or separated.

Anabolic reactions (building up)

Catabolic reactions (breaking down)

CompareAnabolismCatabolism
DirectionSmall molecules joined into large onesLarge molecules split into small ones
EnergyTakes energy in (endergonic)Gives energy out (exergonic)
Type of reactionCondensation — water is madeHydrolysis — water is used up
What the cell getsGrowth, repair and energy storesUsable energy, plus waste ready for removal
ExampleGlucose joined into glycogenGlucose oxidised in respiration
Both are made of enzyme-catalysed steps, and both are coupled to ATP. Catabolism makes ATP; anabolism spends it. That link is what stops the two halves of metabolism from being separate stories.

Metabolic pathways

Cells almost never turn A straight into Z. Instead a molecule is passed along a metabolic pathway: a chain of small reactions, each one catalysed by a different enzyme. The product of one step becomes the substrate of the next.

One pathway, one enzyme per step the product of each reaction becomes the substrate of the next A B C D enzyme 1 enzyme 2 enzyme 3starting metabolite intermediate intermediate end productRemove one enzyme and everything before it piles up. This is why a single faulty gene can cause a metabolic disease. One missing enzyme blocks the whole chain downstream of it.
Because each step is a separate enzyme, the cell can switch a pathway on or off just by changing how much of one enzyme it makes.
This is the bit students skip and examiners love. The cell controls metabolism by controlling its enzymes — no enzyme, no reaction, however much substrate is sitting there.

Worked examples

WORKED EXAMPLE

Classify each reaction as anabolic or catabolic, and give a reason. (a) amino acids joined into a polypeptide (b) starch broken into maltose in the gut

Part (a): look at the size change Many small units (amino acids) become one large molecule. small → large = building up Anabolic it is a condensation reaction and it needs energy in, so it is endergonic too Part (b): same test One large molecule (starch) becomes smaller ones (maltose). large → small = breaking down Catabolic hydrolysis, and energy is released, so exergonic
WORKED EXAMPLE

A cell contains plenty of substrate A but produces no D at all. The pathway is A → B → C → D. Tests show that B is present in high amounts and C is absent. Suggest what has gone wrong. [2]

Step 1: find where the chain stops B is piling up, C never appears. So the block is at the step B → C. Step 2: say what controls that step That step has its own enzyme, and only that enzyme can catalyse it. Enzyme 2 is missing or non-functional B builds up because it can still be made but cannot be used
WORKED EXAMPLE

Explain why a cell needs only a very small quantity of each enzyme. [2]

Step 1: what happens to the enzyme in the reaction The enzyme is not part of the product, and it is unchanged when the reaction finishes. Step 2: what that allows The same enzyme molecule is released and can bind another substrate straight away. Enzymes are reusable, so one molecule catalyses many reactions “used up” is the word to avoid here — that is what happens to substrate, not enzyme

💡 Exam tip

⚠ Common mix-up

Up next: How Enzymes Work — the active site, the enzyme–substrate complex, induced fit, and what actually happens when an enzyme is denatured.

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